Black Lives Matter, and White People Need to Act

It has been a week since #ShutDownSTEM and #Strike4BlackLives on June 10, which was a day to give Black academics in STEM a brief rest and non-Black academics in STEM a time for reflection, education, and planning to eradicate anti-Black racism from our institutions.

Courtesy of header images from WeRepSTEM

Resources and personal experiences poured in through Twitter (especially the #BlackInTheIvory hashtag). The first thing that became immediate is that I have a lot of reading to do. The second thing is simply that reading is not enough. We cannot have this movement end in a day, in a week, in a month, in a year. We all need to work to disrupt the status quo of academia, and there have been calls to action (Michael Eisen’s editorial and Black in Computing’s open letter are just two of many examples). So, in my small way, I’ve made a plan of action.

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NIH Funding by Gender – A Rollercoaster Ride

Nature came out with a News article reporting that, for women who land a large NIH grant, their mid- and late-career funding tracks about the same as men.

Leaky pipeline for women scientists dries up after they win first big grant

Sounds promising, right?  But there’s more to the story.  The original article published in PNAS by Lisa A. Hechtman et al, gives more details (including those listed below).

Good news: women now earn more doctorates in the life sciences, comprising 55% of the recipients in 2016.  This trend has held since 2006, according to the NSF’s statistics.

Bad news: according to the same table, the gender gaps are still large for physical & earth sciences, math & CS, and engineering.

But that’s for another post.

Bad news: despite the gender parity in doctorate recipients, women are underrepresented among assistant professors (even accounting for a postdoctoral research delay).

Bad news: women submit less than one-third of NIH research proposals, according to the NIH.

 

Good news: women who do submit NIH research proposals are as successful as men in obtaining first-time grants.

Good news: the paper studied “funding longevity” among first-time grant awardees between 1991 and 2010, and found that women’s success in securing funding over their careers in this cohort were nearly as good as men (there’s still a gender gap, but it’s small).

Bad news: other gender differences exist when comparing men and women in this cohort of investigators, though the differences are smaller than the previous numbers.  For example, women are less likely to attempt to renew grants and are less successful in the NIH grant renewal process, which is a factor that leads to sustained funding for both genders.

So a mix of good news and bad news, some signs of progress, and indications of where career support may stop the “leaky pipeline.”

Time-to-parity for women publishing in STEM fields

A recent paper by Holman et al. in PLOS Biology presents a new look at the gender gap in publications for millions of authors from over one hundred countries in over six thousand journals.  You can interact with the data through their  web app.

The gender gap in science: How long until women are equally represented?
Luke Holman, Devi Stuart-Fox, Cindy E. Hauser, PLOS Biology 2018.

The authors present the current author gender ratio, its rate of change per year, and the estimate number of years until the gender ratio comes with 5% of parity.  A few notes below the image…

Here are the first things I noticed:

  1. The estimated percent of women authors “maxes out” at 50% (there’s a Figure 2 that includes fields with a higher percentage of women).
  2. arXiv.org – the preprint server that began as a mathematics and physics venue – has particularly poor percent of women authors.
  3. First author percentages tend to be “ahead of the curve” for each discipline, while last authors lag behind the numbers for all authors.  In many fields, first authors denote who did the most work, and last authors denote who funded the work.  My hunch is that a higher proportion of women get papers as graduate students and postdocs, whereas fewer women make it to senior-level faculty as heads of a lab.
  4. On a positive note, more women are publishing in the fields than before (the rate of change is mostly positive).

The paper’s supplementary figure S3 shows data for Computer Science (from arXiv).  Based on current trajectories, only two sub-categories (Information Theory and Robotics) hope to see gender parity within the next 50-100 years.  We still have a long way to go.

Racism in academia – not surprisingly, it’s everywhere

Zuleyka Zevallos, an applied sociologist who does policy research in Australia, just wrote an excellent blog post about racism in academia.  While it speaks directly to researchers and faculty, it’s worth a read for anyone.

Racism in Research and Academia – The Other Sociologist  by Dr. Zuleyka Zevallos

Grants keep coming to Reed Biologists

As a new computational biologist at Reed College, I was excited about the prospect of continuing to do research while teaching innovative courses.  I’ve written about the research opportunities at Reed, and faculty across campus have received over two million dollars of grant funding in 2014/2015.

The Biology Department just secured two more research grants from the M.J. Murdock Charitable Trust to investigate neurogenesis in zebrafish (Dr. Kara Cerveny) and discover candidate driver genes in cancer (me!).

Small schools also have an opportunity to play a large role in undergraduate education programs.  Another NSF grant was recently awarded to Dr. Suzy Renn to organize a STEM workshop on undergraduate involvement in the NSF’s Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative.

All in all, 2016 seems like it will be another great research year.

Networks in Biology (it’s not what you think)

I am currently designing my upper-level undergraduate class I will teach next fall.  The proposed course description* begins with:

Computational Systems Biology

A survey of network models used to gain a systems-level understanding of biological processes.  Topics include computational models of gene regulation, signal transduction pathways, protein-protein interactions, and metabolic pathways…

As a result, I’ve been keeping my eye out for networks (or, mathematically-speaking, graphs) in biology.  I found a fascinating network in this recently-published paper:

Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms
Grunspan DZ, Eddy SL, Brownell SE, Wiggins BL, Crowe AJ, et al. (2016) Males Under-Estimate Academic Performance of Their Female Peers in Undergraduate Biology Classrooms. PLoS ONE 11(2): e0148405. doi: 10.1371/journal.pone.0148405

I often see reports on gender bias in computer science, but I somehow thought that biology would be the least gender biased of the STEM disciplines.  I was surprised that this type of bias has been uncovered in biology, and in classes with more female students than male students.  The paper has already been highlighted on sources such as Science Daily, The Atlantic, and the Huffington Post, among others.  The wealth of information in the paper — from the experimental design to the study setting to the final results — warrants an important, broad discussion.

In this post, however, I’ll focus on the networks.

The authors conducted multiple surveys where students nominated the “best performers” in their introductory biology courses at a large American university.  These surveys were given at different parts of the course, and they were conducted across three different iterations of the same undergraduate biology class.  Figure 1 of the paper shows two networks displaying two surveys from the same class, six weeks apart.

 

 

journal.pone.0148405.g001

Figure 1. Unequal distribution of peer perception of mastery of content among genders grows over the term.  Grunspan et al., PLOS ONE 2016.

These networks show the students (represented as nodes in the graph) in a particular class, and “votes” as directed edges from nominators to nominees.  Male students are shown in green, and female students are shown in orange.  The size of nodes indicates the number of nominations received by each student.  The structure of these networks is striking.  There are many students who do not nominate anyone and are not nominated by anyone, resulting in “singleton” nodes.  In both networks, there is a general cohort of students that receive nominations; however the distribution of these nominations are much more skewed in the second survey.

The intuitive trend that we see in these graphs is that “the green nodes tend to get bigger” corresponding to a larger proportion of nominations go to male students.  However we see female students also receive more nominations in the second survey compared to the first.  The authors quantify these aspects using exponential-family random graph models (ERGMs) to assign coefficients on model statistics relating to gender, outspokenness, and grade.  They found a specific gender bias, that male students tend to nominate other male students, after controlling for grade and outspokenness.  Female students, on the other hand, do not exhibit a gender bias toward nominating males (or females for that matter), after controlling for these factors.

There are many, many other factors that may contribute to these observations, and some are noted in the paper.  The courses were taught (and in some cases co-taught) by four male instructors and only one female instructor, the classes ranged in size from 196 to 760 students, one class employed “random call” lists rather than calling on raised hands.  Besides outspokenness, interactions in lab sections and outside class would undoubtedly affect students’ perceptions.  This paper opens a tremendously important conversation about implicit gender bias in the classroom, even in majors with more female students than male students.  As the paper concludes,

This gender biased pattern in celebrity was experienced by over 1,500 students in our analyses.  This number is striking, but less worrisome than the millions of students who attend college STEM classes that may perpetuate the same biases described here.

Grunspan et al., PLOS ONE 2016.

* Pending approval of various college committees – it may change